Author

Samuel G. Bates

Brandeis UniversityORCID 0000-0002-0650-730XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:C. elegans· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Nathan Harris· 2 shared Piali SenguptaiD· 2 shared Jamie M. Stonemetz· 1 shared John A. CalarcoiD· 1 shared Matthew BernsteiniD· 1 shared Stephen NurrishiD· 1 shared Tyler J. HilliD· 1 shared Yanxun V. YuiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersNeuroscience

Nathan Harris

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2 papers

Recent·Most cited

A repressive regulatory cascade shapes temporal patterning of activity-regulated gene expression in a defined sensory neuron type

Samuel G. Bates, Nathan Harris, Stephen Nurrish, Piali Sengupta

TRAP-seq of C. elegans AFD neurons reveals three temperature-duration expression modules; CREB-driven RCAN-1 acts in parallel with MEF-2 to repress premature expression of a delayed gene, ins-39.

bioRxiv · Jul 29, 2026 · PreprintNeuroscience✦ In-depth digest

Molecular encoding of stimulus features in a single sensory neuron type enables neuronal and behavioral plasticity

Nathan Harris, Samuel G. Bates, Zihao Zhuang, Matthew Bernstein, Jamie M. Stonemetz, Tyler J. Hill, Yanxun V. Yu, John A. Calarco, Piali Sengupta

The paper identifies how temperature stimuli are encoded in the gene expression of C. elegans thermosensory neurons, revealing transcriptional dynamics that drive plasticity.

Current Biology · Mar 27, 2023Peer-reviewedNeuroscience