Author

Min Chen

The University of Texas at DallasORCID 0000-0002-0676-3143Unclaimed ORCID profile · follow to get notified of new preprints

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Min Chen13 papers · Icahn School of Medicine at Mount Sinai

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Hongjun Li· 1 shared Ketki Joshi· 1 shared Maithri Murali· 1 shared Michael Q Zhang· 1 shared Xingyu Chen· 1 shared Xinxin JuiD· 1 shared Zhenyu XuaniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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1 shared paperBioinformatics

Hongjun Li

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 30, 2026

CHACAM: a cell-cell interaction-guided hierarchical attention model for high-precision cell identity annotation of scRNA-seq data in early C. elegans embryogenesis

Xingyu Chen, Xinxin Ju, Maithri Murali…·Michael Q Zhang

CHACAM improves cell identity annotation in C. elegans scRNA-seq data by integrating cell-cell interactions and gene expression to resolve ambiguous lineages.

DOI 10.64898/2026.09.24.754260

C. elegansscRNA-seq

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BioinformaticsbioRxivPreprintSep 26, 2025

Hi-GREx: A 3D Genome Guided Framework for enhancing Gene Expression Prediction Using Hi-C Selected Distal SNPs

Ketki Joshi, Min Chen, Zhenyu Xuan

The paper introduces Hi-GREx, a method using Hi-C data to select long-distance SNPs for improved gene expression prediction, outperforming traditional TWAS approaches.

DOI 10.1101/2025.09.26.678794

humanwhole-genome sequencing

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