Author

Xingyu Chen

Institute of Vegetables and Flowers

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Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Organism:plant (other)· 1

Frequent Co-Authors

Calixto-Hope C. LucasiD· 1 shared Chanel Hutchinson· 1 shared Charles EberhartiD· 1 shared Curtiland DevilleiD· 1 shared Daniel Sforza· 1 shared Devin Miles· 1 shared Eric H. RaabeiD· 1 shared Fanrui MengiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

Calixto-Hope C. LucasORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

CHACAM: a cell-cell interaction-guided hierarchical attention model for high-precision cell identity annotation of scRNA-seq data in early C. elegans embryogenesis

Xingyu Chen, Xinxin Ju, Maithri Murali, Hongjun Li, Min Chen, Michael Q Zhang

CHACAM improves cell identity annotation in C. elegans scRNA-seq data by integrating cell-cell interactions and gene expression to resolve ambiguous lineages.

bioRxiv · Sep 30, 2026 · PreprintBioinformatics

Proton FLASH preserves neurocognition across delivery techniques: implications for clinical translation in pediatric brain tumors

Devin Miles, Daniel Sforza, Nicole Tan, Yanbo Yang, Mina Akter, Xingyu Chen, Chanel Hutchinson, Hawley Helmbrecht, Tyler Findlay, Lingshu Yin, Kan Ota, Masumi Umezawa, Yuncheng Zhong, Curtiland Deville, Matthew Ladra, , Sahaja Acharya

This study shows that synchrotron-based proton FLASH techniques preserve neurocognitive function in mice, with neuroprotection observed across different delivery methods and dose-rate metrics.

bioRxiv · Jun 2, 2026 · PreprintCancer Biology

Haplotype-resolved genome assembly advances genetic understanding of trait diversity in Phalaenopsis orchids

Ruidong Jia, Xinyi Zuo, Liting Zou, L. Wang, Letian Lin, Zhiqing Wang, Yuexia Zhang, Xingyu Chen, Fanrui Meng, Hantang Huang, Lan Lan, Zhimei Li, Fei Wang, Yuxuan Jin, Hongyan Shan, , Peipei Wang

This study presents a haplotype-resolved genome for Phalaenopsis orchids, revealing genetic factors underlying trait diversity such as lip morphology and color patterns.

bioRxiv · Feb 26, 2026 · PreprintGenomics