Author

Cheryl A.C. Peretz

University of California, San FranciscoORCID 0000-0002-0855-6770Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:experimental assay· 3 Assay:scRNA-seq· 3 Research Focus:benchmarking· 2 Research Focus:cancer & tumor microenvironment· 2 Assay:scATAC-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Catherine Choy SmithiD· 4 shared Andrew Koh· 3 shared Elaine TraniD· 3 shared Vanessa Elaine KennedyiD· 3 shared Adam B. OlsheniD· 2 shared Bogdan Ovidiu PopescuiD· 2 shared Matthew F. Jones· 2 shared Natália Faraj MuradiD· 2 shared

Activity by Year

2023-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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4 shared papersCancer Biology

Catherine Choy SmithORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Multi-selective RAS(ON) Inhibition Targets Oncogenic RAS Mutations and Overcomes RAS/MAPK-Mediated Resistance to FLT3 and BCL2 Inhibitors in Acute Myeloid Leukemia

Bogdan Popescu, Matthew F. Jones, Madison Piao, Elaine Tran, Andrew Koh, Isabelle Lomeli, Cheryl A.C. Peretz, Natália Faraj Murad, Sydney Abelson, Carolina Morales, José M. Rivera, Yana Pikman, Michael L. Cheng, Aaron C. Logan, Elliot Stieglitz, Catherine Choy Smith

This study evaluates RMC-7977, a RAS(ON) inhibitor, showing efficacy against RAS-driven resistance in AML and potential for combination therapies.

bioRxiv · Jun 10, 2025 · PreprintCancer Biology

Single Nucleotide Polymorphism (SNP) and Antibody-based Cell Sorting (SNACS): A tool for demultiplexing single-cell DNA sequencing data

Vanessa Elaine Kennedy, Ritu Roy, Cheryl A.C. Peretz, Andrew Koh, Elaine Tran, Catherine Choy Smith, Adam B. Olshen

The paper introduces SNACS, a method for demultiplexing single-cell DNA sequencing data using SNPs and cell-surface antibodies, achieving higher accuracy than existing methods.

Bioinformatics · Jun 1, 2025Peer-reviewedBioinformatics

RAS pathway activation drives clonal selection and monocytic differentiation in FLT3 and BCL2 inhibitor resistance

Vanessa Elaine Kennedy, Cheryl A.C. Peretz, Anushka Walia, Brenda Chyla, Yan Sun, Jason E. Hill, Elaine Tran, Andrew Koh, Timothy T. Ferng, Samantha M. Pintar, Matthew F. Jones, Bogdan Ovidiu Popescu, Natália Faraj Murad, Ritu Roy, Adam B. Olshen, , Catherine Choy Smith

bioRxiv · Feb 2, 2025 · PreprintCancer Biology

Microfluidics-free single-cell genomics with templated emulsification

Iain C. Clark, Kristina M. Fontanez, Robert H. Meltzer, Yi Xue, Corey E. Hayford, Aaron A. May-Zhang, Chris D’Amato, Ahmad Osman, Jesse Q. Zhang, Pabodha Hettige, Jacob S. A. Ishibashi, Cyrille L. Delley, Daniel W. Weisgerber, Joseph M. Replogle, Marco Jost, , Adam R. Abate

The paper introduces PIP-seq, a microfluidics-free method for single-cell RNA sequencing that enables high-throughput, scalable, and flexible processing of samples.

Nature Biotechnology · Mar 6, 2023Peer-reviewedGenomics