Guillaume Gautreau

Precomputed PPanGGOLiN pangenomes for over 4,600 prokaryotic species (Genome Taxonomy Database clusters), with plasticity regions and modules, downloadable via web, API and command line for projection onto new genomes.

CroCoDeEL detects and quantifies cross-sample contamination in metagenomic data without negative controls or prior knowledge, showing high accuracy even at low contamination rates.

This study shows CDKN1A stabilizes cyclin D3 by inhibiting its phosphorylation-dependent nuclear export after butyrate treatment, revealing a mechanism for butyrate-induced cell cycle arrest.

panRGP predicts genomic islands and explores their diversity using pangenome graphs across hundreds of genomes.

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.