Amandine Perrin

BioConvert simplifies life science data format conversion by aggregating tools and providing a unified interface, supporting 50 formats and 100 conversions.

IntegronFinder 2.0 identifies and analyzes integrons in bacterial genomes, revealing a large diversity of integrons and antibiotic resistance genes in Klebsiella pneumoniae.

One modular Python3 pipeline carries a microbial species from genome download through quality filtering, uniform annotation, pangenome and core genome construction, alignment, to a phylogenetic tree.

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.