Author

Muhammad Elsadany

University of IowaORCID 0000-0002-1019-3905Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Organism:human· 4 Approach:statistical model· 4 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2

Frequent Co-Authors

Jacob J. MichaelsoniD· 4 shared Snehajyoti ChatterjeeiD· 3 shared Budhaditya BasuiD· 2 shared Ethan BahliD· 2 shared Li‐Chun LiniD· 2 shared Ted G. AbeliD· 2 shared Utsav MukherjeeiD· 2 shared Yann S. VanrobaeysiD· 2 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersNeuroscience

Jacob J. MichaelsonORCID

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Author profile →

5 papers

Recent·Most cited

Common Dysregulated Pathways and Genes in Alzheimer's, Parkinson's, and Huntington's Diseases: A Computational Analysis to Nominate Candidate Gene Targets for Drug Repurposing

Nehal Adel Abdelsalam, Muhammad Elsadany, Eman Badr

bioRxiv · Jul 25, 2026 · PreprintBioinformatics

Migration genetics link excitatory neurons to ancient selection and economic growth

Lucas G. Casten, Ashton J. Tener, Muhammad Elsadany, Ji Seung Yang, John F. Strang, Jacob J. Michaelson

This study identifies genetic loci associated with migration distance and links them to neurodevelopmental genes, cognition, and economic growth.

bioRxiv · Feb 6, 2026 · PreprintGenomics

Single-cell resolution spatial transcriptomic signature of the retrosplenial cortex during memory consolidation

Savannah Bliese, Budhaditya Basu, Stacy E. Beyer, Muhammad Elsadany, Jacob J. Michaelson, Snehajyoti Chatterjee

This study identifies the transcriptional changes in the retrosplenial cortex during spatial memory consolidation using spatial transcriptomics and shows the role of excitatory neurons in memory formation.

Molecular Psychiatry · Nov 4, 2025Peer-reviewedNeuroscience

NEUROeSTIMator: Using Deep Learning to Quantify Neuronal Activation from Single-Cell and Spatial Transcriptomic Data

Ethan Bahl, Snehajyoti Chatterjee, Utsav Mukherjee, Muhammad Elsadany, Yann S. Vanrobaeys, Li‐Chun Lin, Miriam C. McDonough, Jon M. Resch, Karl-Peter Giese, Ted G. Abel, Jacob J. Michaelson

NEUROeSTIMator uses deep learning to estimate neuronal activation from single-cell and spatial transcriptomic data, showing robustness across species and brain regions.

Nature Communications · Jan 26, 2024Peer-reviewedBioinformatics

The gene expression signature of electrical stimulation in the human brain

Snehajyoti Chatterjee, Muhammad Elsadany, Yann S. Vanrobaeys, Annie I Gleason, Brian J. Park, Shane A. Heiney, Ariane E. Rhone, Kirill V. Nourski, Budhaditya Basu, Utsav Mukherjee, Lucy Langmack, Christopher K. Kovach, Zsuzsanna Kocsis, Yukiko Kikuchi, Yaneri A. Ayala, , Ted G. Abel

This study identifies the gene expression changes in the human brain following electrical stimulation, revealing non-neuronal cell involvement and a conserved gene signature.

bioRxiv · Sep 21, 2023 · PreprintNeuroscience