Michael S. M. Brouwer

The paper benchmarks pangenome graph construction methods using Escherichia coli O157:H7 genomes, showing that representation strategies and assembly completeness significantly affect graph topology and accuracy.

This study examines how sub-inhibitory concentrations of ceftriaxone, combined with colistin and kanamycin, affect intracellular transposition in Escherichia coli, identifying thresholds for environmental impact.

This study shows that anaerobic conditions increase plasmid transfer rates in Escherichia coli strains, revealing oxygen blind spots in conventional conjugation assays.

The paper characterizes six chimeric plasmids from Salmonella Heidelberg, revealing multidrug resistance and increased pathogenicity through genetic and functional analysis.

CArP uses capture-based long-read sequencing to detect pathogens and AMR genes in complex samples, outperforming traditional methods in sensitivity.