Author

Matthew J. Dalby

University of BirminghamORCID 0000-0002-1137-4337Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:metabolomics· 1

Frequent Co-Authors

Lindsay J. HalliD· 3 shared Raymond KiuiD· 3 shared Albert KoulmaniD· 1 shared Antia Acuna-GonzaleziD· 1 shared Barry MurphyiD· 1 shared Darren HeavensiD· 1 shared Dave BakeriD· 1 shared Eleftheria TrampariiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMicrobiology

Lindsay J. HallORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyGenome MedicinePeer-reviewedAug 12, 2026

Decoding the microbiome and resistome of advanced chronic liver disease through long-read metagenomics

Hannah Trivett, Matthew J. Dalby, Ned Peel…·Lindsay J. Hall

This study uses long-read metagenomics to analyze the microbiome and resistome in advanced chronic liver disease, identifying Enterococcus faecium dominance and resistance gene enrichment linked to disease severity.

DOI 10.1186/s13073-026-01724-9

humanmetagenomics

MicrobiologybioRxivPreprintSep 22, 2024

Early life milk diets shape infant gut microbiota: evidence of microbial plasticity in response to breast and formula milk.

Melissa A. Lawson, Matthew J. Dalby, Shabhonam Caim…·Lindsay J. Hall

This study shows that infant gut microbiota at 1 month are most responsive to dietary changes, while 18-month-olds show resilience, with formula affecting fewer metabolic pathways than breast milk.

1 citation

humanmetabolomics

GenomicsMicrobial GenomicsPeer-reviewedJul 10, 2023

An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs

Iliana R. Serghiou, Dave Baker, Rhiannon Evans…·Mark Alexander Webber

The paper describes an optimized DNA extraction method for skin swabs suitable for shotgun metagenomics, validated on adult and baby samples to characterize bacterial microbiota effectively.

8 citations

humanmetagenomics