Author

Tracey W. Chan

University of California, Los AngelesORCID 0000-0002-1236-6304Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Giovanni Quinones-ValdeziD· 2 shared Xinshu Grace XiaoiD· 2 shared Amy Vuong· 1 shared Carlos Gonzalez‐FigueroaiD· 1 shared Chonghui ChengiD· 1 shared Georg O.M. BobkoviD· 1 shared Howard Y. ChangiD· 1 shared Jingyi LyuiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Giovanni Quinones-ValdezORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintFeb 23, 2023

LINE-associated cryptic splicing induces dsRNA-mediated interferon response and tumor immunity

Rong Zheng, Mikayla Dunlap, Jingyi Lyu…·Chonghui Cheng

This study identifies hnRNPM as a suppressor of cryptic splicing and shows its role in preventing dsRNA-mediated interferon responses and tumor immunity.

5 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsScience AdvancesPeer-reviewedSep 2, 2022

scAllele: a versatile tool for the detection and analysis of variants in scRNA-seq

Giovanni Quinones-Valdez, Ting Fu, Tracey W. Chan, Xinshu Grace Xiao

scAllele detects and analyzes nucleotide variants and their allelic linkage to splicing in scRNA-seq data, outperforming existing tools and enabling allele-specific splicing analysis.

17 citations

humanscRNA-seq

𝕏 PostBluesky