Author

Karissa Coleman

Colorado State UniversityORCID 0000-0002-1252-267XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Assay:multiome· 1 Approach:statistical model· 1

Frequent Co-Authors

Erin Osborne NishimuraiD· 3 shared Naly Torres‐MangualiD· 2 shared Andrew MooreiD· 1 shared Caroline A. SpikeiD· 1 shared David C KingiD· 1 shared David GreensteiniD· 1 shared Dylan M. ParkeriD· 1 shared E. MineriD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersDevelopmental Biology

Erin Osborne NishimuraORCID

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3 papers

Recent·Most cited

Developmental BiologyDevelopmentPeer-reviewedJun 1, 2026

The SPN-4 Rbfox RNA-binding protein selects maternal mRNAs for CCR4-NOT-dependent clearance in early Caenorhabditis elegans embryos

Caroline A. Spike, Dylan M. Parker, Tatsuya Tsukamoto…·Erin Osborne Nishimura

The paper identifies SPN-4 as a specificity factor for CCR4-NOT-dependent clearance of maternal mRNAs in C. elegans embryos, showing its role in targeting specific transcripts for decay.

1 citation

C. elegansmultiome

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Cell BiologybioRxivPreprintMay 17, 2026

erm-1 mRNA and ERM-1 protein co-translationally localize to the plasma membrane through a microtubule- and BMK-1-dependent pathway

Naly Torres‐Mangual, Karissa Coleman, Erin Osborne Nishimura

DOI 10.64898/2026.05.15.725403

C. elegansmetagenomics

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GenomicsGeneticsPeer-reviewedMay 15, 2023

Transcriptome profiling of the Caenorhabditis elegans intestine reveals that ELT-2 negatively and positively regulates intestinal gene expression within the context of a gene regulatory network

Robert T. P. Williams, David C King, Izabella R. Mastroianni…·Erin Osborne Nishimura

The paper identifies ELT-2's role in regulating intestinal gene expression in C. elegans by analyzing transcriptome profiles across developmental stages and reveals its dual activation and repression of target genes.

6 citations

C. elegansbulk RNA-seq

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