Author

Jose Espinosa‐Carrasco

Barcelona Institute of Science and TechnologyORCID 0000-0002-1541-042XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:software / tool· 2

Frequent Co-Authors

Cédric NotredameiD· 2 shared Evan W. FlodeniD· 2 shared Júlia Mir-PedroliD· 2 shared Paolo Di TommasoiD· 2 shared Adam GudyśiD· 1 shared Alessio VignoliiD· 1 shared Alexander PeltzeriD· 1 shared Alexey SokoloviD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Cédric NotredameORCID

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2 papers

Recent·Most cited

Empowering bioinformatics communities with Nextflow and nf-core

Björn E. Langer, Andreia Neves do Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip Ewels, Sonia E Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, , The Nf-Core Community

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

Genome biology · Jul 29, 2025Peer-reviewedBioinformatics

An nf-core framework for the systematic comparison of alternative modeling tools: the multiple sequence alignment case study

Luisa Santus, Jose Espinosa‐Carrasco, Leon Rauschning, Júlia Mir-Pedrol, Igor Trujnara, Alessio Vignoli, Leila Mansouri, Athanasios Baltzis, Evan W. Floden, Paolo Di Tommaso, Edgar Garriga Nogales, Adam Gudyś, Sebastian Deorowicz, Cameron L. M. Gilchrist, Martin Steinegger, , Cédric Notredame

The paper presents an nf-core framework for comparing multiple sequence aligners, aiming to streamline deployment and evaluation of MSA tools in HPC environments.

NAR Genomics and Bioinformatics · Jul 4, 2025Peer-reviewedBioinformatics