Author

Daniel Fischer

Natural Resources Institute FinlandORCID 0000-0002-7513-683XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander PeltzeriD· 1 shared Alexey SokoloviD· 1 shared Andreia Neves do AmaraliD· 1 shared Antti KauseiD· 1 shared Björn E. LangeriD· 1 shared Cédric NotredameiD· 1 shared Cervin GuyomariD· 1 shared Christa KuehniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alexander PeltzerORCID

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2 papers

Recent·Most cited

Empowering bioinformatics communities with Nextflow and nf-core

Björn E. Langer, Andreia Neves do Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip Ewels, Sonia E Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, , The Nf-Core Community

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

Genome biology · Jul 29, 2025Peer-reviewedBioinformatics

Fine-Tuning GBS Data with Comparison of Reference and Mock Genome Approaches for Advancing Genomic Selection in Less Studied Farmed Species

Daniel Fischer, Miika Tapio, Oliver Bitz, Terhi Iso‐Touru, Antti Kause, Ilma Tapio

This paper optimizes a ddRAD GBS pipeline for non-model species using mock reference genomes and demonstrates its effectiveness in bovine and European whitefish data.

BMC Genomics · Feb 5, 2025Peer-reviewedBioinformatics