Author

Yi Lin

Mayo ClinicORCID 0000-0002-1556-6416Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Organism:human· 1 Approach:large language model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Haidong DongiD· 2 shared Aaron Scott MansfieldiD· 1 shared Aubrey Y. Liew· 1 shared Hu ZengiD· 1 shared Jean‐Pierre KocheriD· 1 shared Junwen WangiD· 1 shared Mojun ZhuiD· 1 shared Panwen WangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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10 top collaborators · 25 mutual co-author links

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2 shared papersImmunology

Haidong DongORCID

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2 papers

Recent·Most cited

ImmunologybioRxivPreprintJul 25, 2026

Integrative AI-Enabled Virtual Cell Modeling Reveals a Clinically Relevant Latent Effector State of Human CD8 T Cells Undetectable by Conventional Analyses

Ying Li, Mojun Zhu, Roxana Stefania Dronca…·Haidong Dong

The paper uses AI to model CD8 T-cell responses during ICI therapy, identifying a latent effector state that conventional methods miss.

DOI 10.64898/2026.07.22.739582

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Immunopipe: A comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline

Panwen Wang, Yue Yu, Haidong Dong…·Ying Li

Immunopipe provides a flexible pipeline for integrated analysis of scRNA-seq and scTCR-seq data to enhance understanding of T-cell immunity and immunotherapy.

4 citations

𝕏 PostBluesky