Author

Shun Sasaki

Hokkaido UniversityORCID 0000-0002-1611-8367Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Hiro TakahashiiD· 2 shared Hitoshi OnouchiiD· 2 shared Noriya Hayashi· 2 shared Satoshi NaitoiD· 2 shared Taichiro Motomura· 2 shared Yui YamashitaiD· 2 shared Yuta Hiragori· 2 shared Anna Takahashi· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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2 shared papersGenomics

Hiro TakahashiORCID

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2 papers

Recent·Most cited

Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels

Yuta Hiragori, Hiro Takahashi, Taihei Karino, Atsushi Kaido, Noriya Hayashi, Shun Sasaki, Kodai Nakao, Taichiro Motomura, Yui Yamashita, Satoshi Naito, Hitoshi Onouchi

The paper identifies four novel non-AUG-initiated upstream ORFs in Arabidopsis that regulate protein expression levels through conserved sequences.

Plant Molecular Biology · Aug 31, 2022Peer-reviewedGenomics

Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

Hiro Takahashi, Noriya Hayashi, Yuta Hiragori, Shun Sasaki, Taichiro Motomura, Yui Yamashita, Satoshi Naito, Anna Takahashi, Kazuyuki Fuse, Kenji Satou, Toshinori Endo, Shoko Kojima, Hitoshi Onouchi

The paper introduces a pipeline called ESUCA to identify conserved upstream ORFs (CPuORFs) across multiple plant species and finds that many of these CPuORFs are functionally conserved.

BMC Genomics · Mar 30, 2020Peer-reviewedBioinformatics