Author

Shoko Kojima

Chubu UniversityORCID 0009-0002-7872-2575Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Hiro TakahashiiD· 2 shared Anna Takahashi· 1 shared Ayami NakagawaiD· 1 shared Byung‐Yoon Cha· 1 shared Chiyoko MachidaiD· 1 shared Eri Takada· 1 shared Hidekazu IwakawaiD· 1 shared Hitoshi OnouchiiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersDevelopmental Biology

Hiro TakahashiORCID

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2 papers

Recent·Most cited

Arabidopsis epigenetic factor AS2 attenuates nucleolar stress by camptothecin and establishes leaf polarity by repressing a CDK inhibitor

Ayami Nakagawa, Hidekazu Iwakawa, Hiro Takahashi, Simon Vial-Pradel, Mari Takahashi, Kazuomi Ohga, Takuma Ito, Motoki Tamai, Eri Takada, Sumie Keta, Nanako Ishibashi, Sayuri Ando, Iwai Ohbayashi, Masaki A. Ito, Mami Yamazaki, , Chiyoko Machida

The paper identifies camptothecin as a chemical modulator of AS2 function in Arabidopsis, showing its role in leaf polarity by regulating nucleolar stress and CDK inhibitor expression.

bioRxiv · Sep 23, 2025 · PreprintDevelopmental Biology

Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

Hiro Takahashi, Noriya Hayashi, Yuta Hiragori, Shun Sasaki, Taichiro Motomura, Yui Yamashita, Satoshi Naito, Anna Takahashi, Kazuyuki Fuse, Kenji Satou, Toshinori Endo, Shoko Kojima, Hitoshi Onouchi

The paper introduces a pipeline called ESUCA to identify conserved upstream ORFs (CPuORFs) across multiple plant species and finds that many of these CPuORFs are functionally conserved.

BMC Genomics · Mar 30, 2020Peer-reviewedBioinformatics