Author

Pilar Natalia Rodilla-Ramírez

École Polytechnique Fédérale de LausanneORCID 0000-0002-1749-839XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Christof HolligeriD· 2 shared Jaspreet Singh SainiiD· 2 shared Laëtitia CardonaiD· 2 shared Alessandro Ori‬‬iD· 1 shared Aline AdleriD· 1 shared Ari SatanowskiiD· 1 shared Cathy MarulliiD· 1 shared Federico UlianaiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Christof HolligerORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 12, 2026

From dynamic transcripts to stable proteins: multi-omics revealed regulatory buffering of Candidatus Accumulibacter under cyclic conditions

Ruizhe Pei, Laëtitia Cardona, Pilar Natalia Rodilla-Ramírez…·Christof Holliger

This study uses multi-omics data to show that Candidatus Accumulibacter buffers transcriptional dynamics at the protein level, maintaining stable proteomes during cyclic EBPR operations.

DOI 10.64898/2026.10.10.758232

bacteria (other)metagenomics

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MicrobiologyApplied and Environmental MicrobiologyPeer-reviewedApr 4, 2025

Multiple extracellular polymeric substances pathways expressed by Accumulibacter and the flanking community during aerobic granule formation and after influent modification

Laëtitia Cardona, Jaspreet Singh Saini, Pilar Natalia Rodilla-Ramírez…·Christof Holliger

The paper studies microbial community changes and extracellular polymeric substances during aerobic granule formation and under phosphate concentration modification.

10 citations

metagenomicsexperimental assay

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Systems BiologyProceedings of the National Academy of SciencesPeer-reviewedSep 30, 2022

Novel biochemical, structural and systems insights into inflammatory signaling revealed by contextual interaction proteomics

Rodolfo Ciuffa, Federico Uliana, Jonathan Mannion…·Ruedi H. Aebersold

The paper presents an integrated experimental and computational strategy to model protein-protein interactions in cellular context, applied to the TNF-receptor signaling complex.

17 citations

proteomicsexperimental assay

𝕏 PostBluesky