Benjamin James Binder

Experimental design and analysis of sulfide-induced invasive growth in wine yeast

This study identifies conditions for observing sulfide-induced invasive growth in wine yeast and shows genetic and environmental factors influence this behavior.

Agent-based modelling and time series inference of filamentous yeast colonies

The paper develops an agent-based model and neural likelihood estimator to infer parameters of yeast colony growth from time series data, improving parameter estimation and prediction accuracy compared to approximate Bayesian computation.

Modelling the emergence of spiral colony morphology in the yeast Magnusiomyces magnusii

The paper models spiral colony morphology in yeast using an agent-based model and Bayesian inference to infer hyphal growth parameters.

Quantifying the effects of cell death and agar density on yeast colony biofilms using an extensional-flow mathematical model

The paper uses experiments and a mathematical model to show that higher agar density increases yeast biofilm adhesion and decreases nutrient uptake.

Multiscale Analysis of Candida albicans Biofilms

This study analyzes C. albicans biofilm formation using multiscale fluorescence microscopy and introduces new quantification methods to understand growth dynamics and environmental influences.

Accidental and Regulated Cell Death in Yeast Colony Biofilms

This paper develops a continuum model incorporating accidental and regulated cell death to study yeast colony biofilm growth and morphology, showing qualitative agreement with experiments.

Analysing diffusion limited processes in a cylinder using pair-correlation functions

This study develops and evaluates pair-correlation functions for analyzing diffusion-limited processes in cylindrical domains, showing their utility in capturing spatial patterns across various applications.

Competing mechanisms for the buckling of an epithelial monolayer identified using multicellular simulation

The paper uses a multicellular simulation model to identify two competing buckling mechanisms in epithelial monolayers: stromal deformation and stromal separation.

An off-lattice discrete model to characterise filamentous yeast colony morphology

The paper uses an off-lattice agent-based model and experimental data to show that budding mechanisms and nutrient concentration drive filamentous yeast colony morphology.

A rigid body framework for multi-cellular modelling

This paper introduces a rigid body framework for multi-cellular modelling using one-dimensional edges to represent cells, demonstrating its application in replicating established results and solving limitations of current models.