Author

Silvio Bicciato

University of PaduaORCID 0000-0002-1944-7078Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Mattia ForcatoiD· 3 shared Alberto J. ArribasiD· 1 shared Aleksandra TrifunovićiD· 1 shared Alessandro Ghiringhelli· 1 shared Andrea RinaldiiD· 1 shared Andrea SavarinoiD· 1 shared Benedetta Banzi· 1 shared Bojana LuciciD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersCancer Biology

Mattia ForcatoORCID

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3 papers

Recent·Most cited

The RNA helicase DDX21 cooperates with ETS1 and FLI1 in cell cycle, immune evasion, and snoRNA processing in activated B-cell-like diffuse large B-cell lymphoma cells

Giulio Sartori, Valdemar Priebe, Luciano Cascione, Mélanie Juilland, Vincenza Guzzardo, Marco Pizzi, Elaine YL Chung, Sara Napoli, Alberto J. Arribas, Alessandro Ghiringhelli, Stefano Giuffrida, Mattia Forcato, Andrea Rinaldi, Paola Barraja, Silvio Bicciato, , Francesco Bertoni

This study identifies DDX21 as a key effector of ETS1/FLI1 in ABC-DLBCL, linking it to cell cycle, immune evasion, and snoRNA processing, with potential therapeutic implications.

bioRxiv · Jun 5, 2026 · PreprintCancer Biology

SpaceTrooper: a quality control framework for imaging-basedspatial omics data

Benedetta Banzi, Dario Righelli, Matteo Marchionni, Oriana Romano, Mattia Forcato, Davide Risso, Silvio Bicciato

SpaceTrooper provides a data-driven quality control framework for imaging-based spatial omics data, improving clustering and cell-type coherence by identifying low-quality cells without fixed thresholds.

bioRxiv · Dec 26, 2025 · PreprintBioinformatics

Alterations of redox and iron metabolism accompany development of HIV latency.

Iart Luca Shytaj, Bojana Lucic, Mattia Forcato, Carlotta Penzo, James M. Billingsley, Vibor Laketa, Steven E. Bosinger, Mia Stanić, Francesco Gregoretti, Laura Antonelli, Gennaro Oliva, Christian Karl Frese, Aleksandra Trifunović, Bruno Galy, Clarissa Eibl, , Marina Lušić

The paper identifies alterations in redox and iron metabolism associated with HIV-1 latency development and suggests iron metabolism modulators as potential therapeutic tools.

The EMBO Journal · Mar 11, 2020Peer-reviewedMolecular Biology