Author

Tauanne Dias Amarante

University of CambridgeORCID 0000-0002-1999-9753Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Cherif BadjaiD· 2 shared Ching Chiek KohiD· 2 shared Xueqing ZouiD· 2 shared Adam P GiessiD· 1 shared Afshan SiddiqiD· 1 shared Alexander SieghartiD· 1 shared Alexander StuckeyiD· 1 shared Alona SosinskyiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Cherif BadjaORCID

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2 papers

Recent·Most cited

Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells

Foad J. Rouhani, Xueqing Zou, Petr Danecek, Cherif Badja, Tauanne Dias Amarante, Ching Chiek Koh, Qianxin Wu, Yasin Memari, Richard Michael Durbin, Iñigo Martincorena, Andrew Roger Bassett, Daniel J. Gaffney, Serena Nik‐Zainal

The paper analyzes genomic variation in hiPSCs derived from skin and blood, finding high mutation rates in fibroblast-derived lines and frequent BCOR mutations in blood-derived lines.

Nature Genetics · Aug 11, 2022Peer-reviewedGenomics

Dissecting mutational mechanisms underpinning signatures caused by replication errors and endogenous DNA damage

Xueqing Zou, Ching Chiek Koh, Arjun Scott Nanda, Andrea Degasperi, Katie Urgo, Theodoros I. Roumeliotis, Chukwuma A. Agu, Cherif Badja, Sophie Momen, Jamie Young, Tauanne Dias Amarante, Lucy E. Side, Glen W. Brice, Vanesa Pérez‐Alonso, Daniel Rueda, , Magdalena Zarowiecki

The paper identifies gene-specific mutational signatures caused by replication errors and endogenous DNA damage using CRISPR-Cas9 knockouts and whole-genome sequencing.

Nature Cancer · Apr 26, 2021Peer-reviewedGenomics