Author

Tao Chen

Anhui UniversityORCID 0000-0002-2147-709XUnclaimed ORCID profile · follow to get notified of new preprints

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Tao Chen8 papers · Huazhong Agricultural University

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Amanda M. LarracuenteiD· 1 shared Bing ZhangiD· 1 shared Caijin Wang· 1 shared Cécile CourretiD· 1 shared Dengjie Luo· 1 shared Fang Ye· 1 shared Gang JiniD· 1 shared Huimin LiuiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperGenetics

Amanda M. LarracuenteORCID

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3 papers

Recent·Most cited

MimicNeoAI: An integrated pipeline for identifying microbial epitopes and mimicry of tumor neoepitopes

Tao Chen, Wei Wang, Xiao Zuo, Yuxin Zhang, Zhilei Li, Ya-Ling He, Yanfei Zhou, Fang Ye, Bing Zhang, Qionghui Jiang, Huimin Liu, Lu Zhang, Jinman Fang, Yuanwei Zhang

MimicNeoAI identifies microbial epitopes and their tumor neoepitope mimics from sequencing data, revealing highly immunogenic microbial epitopes specific to tumors.

bioRxiv · Jun 13, 2025 · PreprintBioinformatics

The AP2/ERF transcription factor HcERF5 confers drought tolerance via ABA-mediated signaling in kenaf

Dengjie Luo, Samavia Mubeen, Muzammal Rehman, Shan Cao, Caijin Wang, Jiao Yue, Jiao Pan, Gang Jin, Ru Li, Tao Chen, Peng Chen

This study identifies HcERF5 as a key transcription factor in kenaf that enhances drought tolerance through ABA-mediated signaling and regulates stress response genes.

bioRxiv · Aug 1, 2024 · PreprintMolecular Biology

The nanoCUT&RUN technique visualizes telomeric chromatin in Drosophila

Tao Chen, Xiaolu Wei, Cécile Courret, Min Cui, Lin Zhang Cheng, Jing Wu, Kami Ahmad, Amanda M. Larracuente, Yikang S. Rong

The paper introduces nanoCUT&RUN, a modified CUT&RUN technique for mapping chromatin protein binding sites in Drosophila, showing its effectiveness for TRL, HipHop, and HOAP proteins.

PLoS Genetics · Sep 1, 2022Peer-reviewedGenetics