Author

Giorgia Egidy

AgroParisTechORCID 0000-0002-5206-4597Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Aline Primot· 1 shared Andréa RauiD· 1 shared David MauduitiD· 1 shared Édouard Cadieu· 1 shared Elisabetta GiuffraiD· 1 shared Ellen van RooijeniD· 1 shared Fany BlanciD· 1 shared Fréderic Pepke· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Aline Primot

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Adult porcine intestinal organoids as models for regional epithelial identity and individual regulatory variation

Fany Blanc, Smahane Chalabi, Fréderic Pepke, Mayrone Mongellaz, Mathieu Charles, Andréa Rau, Sarah Djebali, Giorgia Egidy, Elisabetta Giuffra

The paper profiles RNA-seq from porcine intestinal organoids and tissues to assess their retention of regional identity and animal-specific molecular signatures.

bioRxiv · Oct 29, 2025 · PreprintGenomics

Cross-species analysis of melanoma enhancer logic using deep learning

Liesbeth Minnoye, Ibrahim Ihsan Taskiran, David Mauduit, Maurizio Fazio, Linde Van Aerschot, Gert J. Hulselmans, Valerie Christiaens, Samira Makhzami, Monika Heidemarie Seltenhammer, Panagiotis Karras, Aline Primot, Édouard Cadieu, Ellen van Rooijen, Jean‐Christophe Marine, Giorgia Egidy, , Stein Aerts

The paper uses deep learning to analyze enhancer logic across species in melanoma, identifying conserved regulatory complexes and their roles.

Genome Research · Dec 1, 2020Peer-reviewedGenomics