Author

Alexander J. Brown

Washington State UniversityORCID 0000-0002-2337-1053Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Stephanie N. SeifertiD· 2 shared Adeola A FagunloyeiD· 1 shared Anna C. FagreiD· 1 shared Braulio BonillaiD· 1 shared Catherine A. Pressimone· 1 shared Debra MitchelliD· 1 shared Emily E. SperanzaiD· 1 shared Ewa P. MalciD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Stephanie N. SeifertORCID

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3 papers

Recent·Most cited

MicrobiologyPLoS neglected tropical diseasesPeer-reviewedMar 6, 2026

Comparative susceptibility of Old World and New World bat cell lines to Zika virus: Insights into viral replication and inflammatory responses

Alexander J. Brown, Anna C. Fagre, Julianna Gilson…·Stephanie N. Seifert

This study compares the susceptibility of Old World and New World bat cell lines to Zika virus, finding that Old World bat cells support viral replication and strong inflammatory responses.

1 citation

mousehuman

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BioinformaticsbioRxivPreprintJul 9, 2025

TATAT: a containerized software for generating annotated coding transcriptomes from raw RNA-seq data

Alexander J. Brown, Stephanie N. Seifert

TATAT generates annotated coding transcriptomes from raw RNA-seq data using a standardized, Dockerized workflow, demonstrating its effectiveness on the Egyptian rousette bat.

DOI 10.1101/2025.07.09.663867

non-human primatebulk RNA-seq

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GeneticseLifePeer-reviewedNov 1, 2021

The Shu Complex Prevents Mutagenesis and Cytotoxicity of Single-Strand Specific Alkylation Lesions

Braulio Bonilla, Alexander J. Brown, Sarah R Hengel…·Kara Anne Bernstein

This study shows the yeast Shu complex prevents mutagenesis from 3meC lesions by binding to them and reducing replication errors.

8 citations

yeastDNA methylation

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