Author
Children's Hospital of PhiladelphiaORCID 0000-0002-2455-9525Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Zhuangzhuang Geng, Eric K. Wafula, Ryan J. Corbett…·Jo Lynne Rokita
The paper introduces OpenPedCan, a harmonized multi-omic dataset of pediatric cancer patients, providing integrated genomic, transcriptomic, and proteomic data for research and clinical applications.
Daniel J. B. Clarke, John Erol Evangelista, Zhuorui Xie…·Avi Ma’ayan
The paper introduces a web-based platform for building bioinformatics workflows using APIs, enabling hypothesis generation across multiple data sources.
Joshua A. Shapiro, Krutika Satish Gaonkar, Stephanie J. Spielman…·Jaclyn Taroni
OpenPBTA provides a collaborative platform to genomically characterize 1,074 pediatric brain tumors and 22 cell lines, offering analysis modules and somatic datasets for research and clinical applications.
Arash Nabbi, Pengbo Beck, Alberto Delaidelli…·Trevor J. Pugh
The paper identifies four immune clusters in pediatric nervous system tumors using RNA-seq data and validates them with multiple methods, highlighting the need for personalized immunogenomic profiling.
Krutika Satish Gaonkar, Fédérico Marini, Komal S. Rathi…·Jo Lynne Rokita
annoFuse filters and prioritizes oncogenic gene fusions from RNA-Seq data, improving identification of clinically relevant fusions in cancer datasets.