Author

Andrew Bassim Hassan

University of OxfordORCID 0000-0002-2517-6681Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1

Frequent Co-Authors

Mirvat SurakhyiD· 2 shared Paul MetziD· 2 shared Charlotte J. ImianowskiiD· 1 shared Claudia Bühnemann· 1 shared David BarnesiD· 1 shared Emma J. CarteriD· 1 shared Hans M. MorreauiD· 1 shared J. Caesar· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCancer Biology

Mirvat SurakhyORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintMay 19, 2026

Tumour neoantigen repertoire computational predictions in malignant peripheral nerve sheath tumours define potential targets for immunotherapy

Mirvat Surakhy, J. Caesar, Masooma Rajput…·Andrew Bassim Hassan

This study predicts neoantigen repertoires in MPNSTs and identifies immune-related differences between PRC2-Loss and PRC2-WT subtypes, highlighting potential immunotherapy targets.

DOI 10.64898/2026.04.05.713607

humanwhole-exome sequencing

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GenomicsbioRxivPreprintSep 7, 2025

Guide RNA library representation results in gene essentiality prediction bias in genome-wide CRISPR screens

Paul Metz, Sofia Alves-Vasconcelos, Richard W. R. Wallbank…·Andrew Bassim Hassan

This study shows that gRNA library representation bias affects gene essentiality predictions in CRISPR screens, with library choice being the most significant factor.

DOI 10.1101/2025.09.07.673082

humanCRISPR screen

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Cancer BiologyScientific ReportsPeer-reviewedMay 10, 2025

Smad4 and TGF-β1 dependent gene expression biomarkers in conditional intestinal adenoma, organoids and colorectal cancer.

Mirvat Surakhy, Julia Matheson, David Barnes…·Andrew Bassim Hassan

The paper identifies Smad4 and TGF-β1 dependent gene expression biomarkers in intestinal adenomas and colorectal cancer using murine models and RNA sequencing.

4 citations

mousebulk RNA-seq

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