Author

Valerio Arnaboldi

California Institute of TechnologyORCID 0000-0002-2563-5374Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Paul W. SternbergiD· 3 shared Christopher J. TaboneiD· 2 shared Daniela RacitiiD· 2 shared Hans-Michael MulleriD· 2 shared Kimberly M. Van AukeniD· 2 shared A. Jordan WrightiD· 1 shared Aaron M. ZorniD· 1 shared Adam C GibsoniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Paul W. SternbergORCID

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Author profile →

3 papers

Recent·Most cited

Characterization and automated classification of sentences in the biomedical literature: a case study for biocuration of gene expression and protein kinase activity

Daniela Raciti, Kimberly M. Van Auken, Valerio Arnaboldi, Christopher J. Tabone, Hans-Michael Muller, Paul W. Sternberg

The paper develops sentence classification models to identify biocuration-relevant sentences for gene expression and protein kinase activity from scientific literature, achieving high F1 scores with GPT and BioBERT.

Database · Jan 1, 2025Peer-reviewedBioinformatics

Updates to the Alliance of Genome Resources Central Infrastructure

Suzi Aleksander, Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen L. Attrill, Andrés Becerra, Susan M Bello, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, , Aaron M. Zorn

The paper updates the Alliance of Genome Resources' central infrastructure, adding tools and enhancing data management and curation capabilities.

bioRxiv · Nov 20, 2023 · PreprintBioinformatics

Single cell tools for WormBase

Eduardo da Veiga Beltrame, Valerio Arnaboldi, Paul W. Sternberg

The paper introduces two web apps for analyzing single-cell RNA sequencing data with C. elegans datasets from WormBase.

Bioinformatics Advances · Jan 1, 2022Peer-reviewedBioinformatics