Author

Yvonne M. Bradford

University of OregonORCID 0000-0002-9900-7880Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Approach:statistical model· 3 Organism:zebrafish· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Organism:Drosophila· 1 Approach:machine learning (classical)· 1 Organism:multiple species· 1

Frequent Co-Authors

Amy SingeriD· 3 shared Ceri E. Van SlykeiD· 3 shared Christian PichiD· 3 shared David S. FashenaiD· 3 shared Holly Paddock· 3 shared Leyla RuzickaiD· 3 shared Monte WesterfieldiD· 3 shared Sridhar RamachandraniD· 3 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Amy SingerORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics

Nicolas Matentzoglu, Susan M. Bello, Ray Stefancsik, Sarah M. Alghamdi, Anna V. Anagnostopoulos, James P. Balhoff, Meghan A. Balk, Yvonne M. Bradford, Yasemin Bridges, Tiffany J. Callahan, Harry Caufield, Alayne Cuzick, Leigh Carmody, Anita R. Caron, Vinícius de Souza, , David Osumi-Sutherland

The paper introduces uPheno, a framework for cross-species phenomics integration by harmonizing phenotype data across species and ontologies.

Genetics · Mar 1, 2025Peer-reviewedBioinformatics

Updates to the Alliance of Genome Resources Central Infrastructure

Suzi Aleksander, Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen L. Attrill, Andrés Becerra, Susan M Bello, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, , Aaron M. Zorn

The paper updates the Alliance of Genome Resources' central infrastructure, adding tools and enhancing data management and curation capabilities.

bioRxiv · Nov 20, 2023 · PreprintBioinformatics

From Multi-Allele Fish to Non-Standard Environments, How ZFIN Assigns Phenotypes, Human Disease Models, and Gene Expression Annotations to Genes

Yvonne M. Bradford, Ceri E. Van Slyke, Douglas G. Howe, David S. Fashena, Ken Frazer, Ryan Martin, Holly Paddock, Christian Pich, Sridhar Ramachandran, Leyla Ruzicka, Amy Singer, Ryan Taylor, Wei-Chia Tseng, Monte Westerfield

The paper describes how ZFIN annotates phenotype, expression, and disease model data in zebrafish research across different experimental designs.

Genetics · Mar 2, 2023Peer-reviewedBioinformatics

Zebrafish Information Network, the knowledgebase for Danio rerio research

Yvonne M. Bradford, Ceri E. Van Slyke, Leyla Ruzicka, Amy Singer, Anne E. Eagle, David S. Fashena, Douglas G. Howe, Ken Frazer, Ryan Martin, Holly Paddock, Christian Pich, Sridhar Ramachandran, Monte Westerfield

The paper describes ZFIN, a central repository for zebrafish genetic and genomic data, emphasizing its role in curating, integrating, and making data FAIR for research.

Genetics · Feb 15, 2022Peer-reviewedGenetics