Author

Daisuke Shinmachi

Cellular and Molecular Biotechnology Research InstituteORCID 0000-0002-2591-3987Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:experimental assay· 2 Assay:metagenomics· 1 Organism:mouse· 1 Assay:proteomics· 1

Frequent Co-Authors

Kiyoko Flora Aoki-KinoshitaiD· 2 shared Atsushi KunoiD· 1 shared Carsten KettneriD· 1 shared Chiaki Nagai‐OkataniiD· 1 shared Christopher AshwoodiD· 1 shared Chunsheng JiniD· 1 shared Daniel KolarichiD· 1 shared Frédérique LisacekiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Kiyoko Flora Aoki-KinoshitaORCID

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2 papers

Recent·Most cited

LM-GlycoRepo Version 1.0: A novel repository system for mouse tissue glycome mapping data

Chiaki Nagai‐Okatani, Noriaki Fujita, Patcharaporn Boottanun, Miyuki Tanaka, Masaaki Shiota, Daisuke Shinmachi, Kiyohiko Angata, Kiyoko Flora Aoki-Kinoshita, Atsushi Kuno

LM-GlycoRepo Version 1.0 is a repository for mouse tissue glycome mapping data that supports FAIR principles and includes an embargo system and visualization tool.

Journal of Proteome Research · Jun 11, 2025Peer-reviewedBioinformatics

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Miguel A. Rojas‐Macias, Julien A. Mariethoz, Peter Andersson, Chunsheng Jin, Vignesh Venkatakrishnan, Nobuyuki P. Aoki, Daisuke Shinmachi, Christopher Ashwood, Katarina Madunić, Tao Zhang, Rebecca Louise Miller, Oliver Horlacher, Weston B. Struwe, Fredrik Levander, Daniel Kolarich, , Niclas G. Karlsson

The paper describes an e-infrastructure for recording glycomic mass spectrometric data in compliance with MIRAGE reporting guidelines, enabling standardized data submission to a public repository.

bioRxiv · Aug 27, 2018 · PreprintBioinformatics