Author

Hamza Dallali

Sapienza University of RomeORCID 0000-0002-3186-697XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell-cell communication· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1

Frequent Co-Authors

Elena Di TommasoiD· 2 shared Simona GiuntaiD· 2 shared Alessandro RosaiD· 1 shared Alessio ColantoniiD· 1 shared Alexander G. IoannidisiD· 1 shared Andrea GuarracinoiD· 1 shared Andrea Tanzer AiD· 1 shared Emilia Volpe· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Elena Di TommasoORCID

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2 papers

Recent·Most cited

The diploid reference genome of a human embryonic stem cell line

Ivana Pačar, Matteo Tommaso Ungaro, Ying Chen, Hamza Dallali, Jack A Medico, Prajna Hebbar, Mark Diekhans, Elena Di Tommaso, Margarita Geleta, Patricia P. Chan, Todd M. Lowe, Jennifer Ballaco, Nivesh Jain, Francine Ackerman, Michela Mochi, , Simona Giunta

The paper presents the first telomere-to-telomere diploid reference genome of the human embryonic stem cell line H9, revealing genomic features and ancestry.

bioRxiv · Mar 30, 2026 · PreprintGenomics

The complete human diploid reference genome of RPE-1 identifies the phased epigenetic landscapes from multi-omics data

Luca Corda, Emilia Volpe, Hamza Dallali, Elena Di Tommaso, Alessio Colantoni, Andrea Guarracino, Sai Swaroop Chittoor, Mattia Capulli, Evelyne Tassone, Simona Giunta

The paper generates a complete diploid genome assembly for RPE-1 cells and uses it as a matched reference to improve multi-omics data analysis and identify haplotype-specific epigenetic variation.

Nature Communications · Nov 20, 2025Peer-reviewedGenomics