The paper introduces a semi-automated tool to improve data annotation in ImmPort by streamlining template population and ensuring formatting consistency.

bioRxiv · Oct 10, 2026 · PreprintImmunology

LungMAP Portal Ecosystem: Systems-Level Exploration of the Lung

Nathan Gaddis, Joshua D. Fortriede, Minzhe Guo, Eric E. Bardes, Michal Kouril, Scott Tabar, Kevin A. Burns, Mary-Anne Ardini, Stephanie Loos, Daniel Schnell, Kang Jin, Balaji Iyer, Yina Du, Bing‐Xing Huo, Anukana Bhattacharjee, , Nathan Salomonis

The paper describes the LungMAP Portal Ecosystem, a centralized resource integrating multi-omics and imaging data across species to enable standardized analysis of lung biology and disease.

American Journal of Respiratory Cell and Molecular Biology · Nov 22, 2022Peer-reviewedSystems Biology

The Xenopus Phenotype Ontology: bridging model organism phenotype data to human health and development.

Malcolm E Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James‐Zorn, Nivitha Sundararaj, Vaneet Lotay, Virgilio G. Ponferrada, Dong Zhuo Wang, Eugene Kim, , Aaron M. Zorn

The paper introduces the Xenopus Phenotype Ontology (XPO) to standardize phenotype data from Xenopus experiments and link them to human health and development.

BMC Bioinformatics · Mar 22, 2022Peer-reviewedBioinformatics