Author

Mahir Patel

Boston UniversityORCID 0000-0002-3370-4595Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Anna BerensoniD· 2 shared Cosmin Ciausu· 2 shared Juan I. Fuxman BassiD· 2 shared Luis F. Soto-Ugaldi· 2 shared Ryan LaneiD· 2 shared Sakshi ShahiD· 2 shared Zhaorong LiiD· 2 shared Clarissa Stephanie SantosoiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersSystems Biology

Anna BerensonORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Multilayered specificity of transcription factor binding at cytokine promoters

Anna Berenson, Ryan Lane, Yunwei Lu, Sakshi Shah, Zhaorong Li, Luis F. Soto-Ugaldi, Mahir Patel, Cosmin Ciausu, Matias Alejandro Paz, Juan I. Fuxman Bass

The paper identifies TF-DNA binding interactions at cytokine promoters, showing that TF cooperativity and antagonism significantly influence DNA-binding specificity.

bioRxiv · Jul 8, 2026 · PreprintSystems Biology

How do egocentric boundary cells depend upon the coordinate system of environmental features?

Jennifer C. Robinson, Patrick A. LaChance, Samantha Malmberg, Mahir Patel, Elaina Gross, Danielle E. Everett, Shruthi Sankaranarayanan, Jiarui Fang, Michael Erik Hasselmo

The paper models how egocentric boundary cells in RSC and POR respond to environmental features using different coordinate systems and proposes hypotheses for their functional roles in navigation.

bioRxiv · Feb 3, 2025 · PreprintNeuroscience

Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors

Anna Berenson, Ryan Lane, Luis F. Soto-Ugaldi, Mahir Patel, Cosmin Ciausu, Zhaorong Li, Yilin Chen, Sakshi Shah, Clarissa Stephanie Santoso, Xing Liu, Kerstin Spirohn, Tong Hao, DAVID EDWIN HILL, Marc Vidal, Juan I. Fuxman Bass

The paper introduces paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism between transcription factors and demonstrates their application across various TF pairs.

Nature Communications · Oct 18, 2023Peer-reviewedSystems Biology