Author

Maria Paraskevi Chatzinikolaou

Stockholm UniversityORCID 0000-0002-3539-9088Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Mats F. NilssoniD· 2 shared Amanda LindbergiD· 1 shared Anastasia MagoulopoulouiD· 1 shared Andreas MetousisiD· 1 shared Artur MezheyeuskiiD· 1 shared Axel AnderssoniD· 1 shared Carina StrelliD· 1 shared Carolina WählbyiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersCancer Biology

Mats F. NilssonORCID

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2 papers

Recent·Most cited

TCR clonality and TCR clonal expansion in the in situ microenvironment of non-small cell lung cancer

Hui Yu, Anastasia Magoulopoulou, Rose‐Marie Amini, Maria Paraskevi Chatzinikolaou, Masafumi Horie, Amanda Lindberg, Artur Mezheyeuski, Max Backman, Andreas Metousis, Hans Brunnström, Millaray Marincevic, Johan Botling, Johanna Sofia Margareta Mattsson, Klas Kärre, Karin Leandersson, , Patrick Micke

This study links TCR clonality in NSCLC to genetic mutations, immune phenotypes, immunotherapy response, and patient survival.

Journal for ImmunoTherapy of Cancer · Aug 1, 2025Peer-reviewedCancer Biology

Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows

Sergio Marco Salas, Louis Benedikt Kuemmerle, Christoffer Mattsson Langseth, Sebastian Tiesmeyer, Christophe Avenel, Taobo Hu, Habib Rehman, Marco Grillo, Paulo Czarnewski, Saga Helgadóttir, Katarína Tiklová, Axel Andersson, Nima Rafati, Maria Paraskevi Chatzinikolaou, Fabian Joachim Theis, , Mats F. Nilsson

This study evaluates the Xenium In Situ spatial transcriptomics platform using mouse brain and human breast cancer datasets, comparing it to other technologies and benchmarking analysis tools.

Nature Methods · Mar 13, 2025Peer-reviewedBioinformatics