Katarína Tiklová

Efficient murine cardiac phenotyping by combining synchrotron-based phase-contrast micro-CT, histology, immunofluorescence and spatial transcriptomics

The paper combines SRPC-microCT with spatial transcriptomics and histology to enable 3D cardiac phenotyping in mice, linking structural and molecular data.

Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows

This study evaluates the Xenium In Situ spatial transcriptomics platform using mouse brain and human breast cancer datasets, comparing it to other technologies and benchmarking analysis tools.

Sox9 and Nfi transcription factors regulate the timing of neurogenesis and ependymal maturation in dopamine progenitors

This study identifies Sox9 and Nfi transcription factors as regulators of G0 entry and ependymal maturation in midbrain dopamine progenitors, with effects dependent on developmental timing.

Single Cell Gene Expression Analysis Reveals Human Stem Cell-Derived Graft Composition in a Cell Therapy Model of Parkinson’s Disease

The paper uses scRNA-seq to analyze graft composition in a Parkinson’s disease cell therapy model, revealing differences between human stem cell-derived and fetal tissue grafts.