Author

Wei Shen

Huazhong Agricultural UniversityORCID 0000-0002-3585-0369Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Wei Shen3 papers · ARUP Laboratories;

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:Hi-C· 2 Assay:ChIP-seq· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Chunhui HouiD· 3 shared Jialei SuniD· 3 shared Li LiiD· 3 shared Longjian NiuiD· 3 shared Na HeiD· 3 shared Yingzhang HuangiD· 3 shared Yuedong ZhangiD· 3 shared Jing WaniD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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3 shared papersGenomics

Chunhui HouORCID

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3 papers

Recent·Most cited

Systematic Chromatin Architecture Analysis in Xenopus tropicalis Reveals Conserved Three-Dimensional Folding Principles of Vertebrate Genomes

Longjian Niu, Wei Shen, Zhaoying Shi, Yongjun Tan, Na He, Jing Wan, Jialei Sun, Yuedong Zhang, Yingzhang Huang, Wenjing Wang, Chao Fang, Jiashuo Li, Piaopiao Zheng, Edwin Chong Wing Cheung, Yonglong Chen, , Chunhui Hou

This study analyzes chromatin architecture in Xenopus tropicalis, revealing TAD formation dynamics and conserved CTCF-Rad21 orientation patterns across vertebrates.

Nature Genetics · Jun 7, 2021Peer-reviewedGenetics

Global Quantitative Mapping of Enhancers in Rice Genome by STARR-seq

Jialei Sun, Na He, Longjian Niu, Yingzhang Huang, Wei Shen, Yuedong Zhang, Li Li, Chunhui Hou

The paper quantitatively identifies enhancers in the rice genome using STARR-seq and reports their genomic locations and epigenetic features.

Genomics Proteomics & Bioinformatics · Apr 1, 2019Peer-reviewedGenomics

Amplification-free Library Preparation Improves Quality of Hi-C Analysis

Longjian Niu, Wei Shen, Yingzhang Huang, Na He, Yuedong Zhang, Jialei Sun, Jing Wan, Daxin Jiang, Manyun Yang, Yu Chung Tse, Li Li, Chunhui Hou

This paper introduces an amplification-free Hi-C library preparation method that improves chromatin interaction quality and reduces sequencing depth requirements.

bioRxiv · Feb 27, 2019 · PreprintGenomics