Author

Na He

Southern University of Science and TechnologyORCID 0000-0002-1571-0748Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Organism:Arabidopsis· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1

Frequent Co-Authors

Chunhui HouiD· 4 shared Jialei SuniD· 4 shared Li LiiD· 4 shared Longjian NiuiD· 4 shared Yingzhang HuangiD· 4 shared Wei SheniD· 3 shared Yuedong ZhangiD· 3 shared Jing WaniD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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4 shared papersGenetics

Chunhui HouORCID

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4 papers

Recent·Most cited

Systematic Chromatin Architecture Analysis in Xenopus tropicalis Reveals Conserved Three-Dimensional Folding Principles of Vertebrate Genomes

Longjian Niu, Wei Shen, Zhaoying Shi, Yongjun Tan, Na He, Jing Wan, Jialei Sun, Yuedong Zhang, Yingzhang Huang, Wenjing Wang, Chao Fang, Jiashuo Li, Piaopiao Zheng, Edwin Chong Wing Cheung, Yonglong Chen, , Chunhui Hou

This study analyzes chromatin architecture in Xenopus tropicalis, revealing TAD formation dynamics and conserved CTCF-Rad21 orientation patterns across vertebrates.

Nature Genetics · Jun 7, 2021Peer-reviewedGenetics

Resolving a Systematic Error in STARR-seq for QuantitativeEnhancer Activity Mapping

Longjian Niu, Jing Wan, Jialei Sun, Yingzhang Huang, Na He, Li Li, Chunhui Hou

The paper identifies a systematic error in STARR-seq for enhancer activity measurement in Arabidopsis thaliana and proposes a solution using specialized primers to recover self-transcripts, revealing new insights into enhancer function.

bioRxiv · Oct 20, 2020 · PreprintGenetics

Global Quantitative Mapping of Enhancers in Rice Genome by STARR-seq

Jialei Sun, Na He, Longjian Niu, Yingzhang Huang, Wei Shen, Yuedong Zhang, Li Li, Chunhui Hou

The paper quantitatively identifies enhancers in the rice genome using STARR-seq and reports their genomic locations and epigenetic features.

Genomics Proteomics & Bioinformatics · Apr 1, 2019Peer-reviewedGenomics

Amplification-free Library Preparation Improves Quality of Hi-C Analysis

Longjian Niu, Wei Shen, Yingzhang Huang, Na He, Yuedong Zhang, Jialei Sun, Jing Wan, Daxin Jiang, Manyun Yang, Yu Chung Tse, Li Li, Chunhui Hou

This paper introduces an amplification-free Hi-C library preparation method that improves chromatin interaction quality and reduces sequencing depth requirements.

bioRxiv · Feb 27, 2019 · PreprintGenomics