Aaron T. Timperman

The paper profiles gut bacterial extracellular vesicles (bEVs) and links their cargo composition to host transcriptional responses across different cell types.

This paper develops a proteomics strategy for detecting viral mutations and variants in saliva by prioritizing high-prevalence peptides and using G-PTM-D for sensitive variant discovery.

This paper evaluates virome analysis methods using a synthetic viral community, finding that VLP enrichment improves read yields and longer sequencing cycles enhance genome assembly.