Stephanie Ting

Machine learning of three-dimensional protein structures to predict the functional impacts of genome variation

This paper develops a machine learning method using protein structures to predict the functional impacts of genetic variants on transcriptional pathways of Nrf2 and c-MYC.

CytoCellDB: A Resource Database For Classification and Analysis of Extrachromosomal DNA in Cancer

CytoCellDB is a database that expands the number of cancer cell lines with ecDNA annotations, enabling analysis of ecDNA in relation to molecular data and drug responses.

Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies

This paper introduces REVEALER 2.0, an improved algorithm for identifying genomic alterations associated with functional profiles, showing increased speed and resolution for analyzing cancer genomic data.