Author

Glen Threadgold

Wellcome Sanger InstituteORCID 0000-0002-4475-0183Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Organism:human· 1 Organism:mouse· 1 Organism:plant (other)· 1 Approach:statistical model· 1

Frequent Co-Authors

Kerstin HoweiD· 3 shared Beiyuan FuiD· 2 shared Fengtang YangiD· 2 shared James TorranceiD· 2 shared Joanna CollinsiD· 2 shared Matt Dunn· 2 shared Paul FlicekiD· 2 shared William ChowiD· 2 shared

Activity by Year

2015-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersGenomics

Kerstin HoweORCID

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3 papers

Recent·Most cited

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Jingtao Lilue, Anthony Doran, Ian T. Fiddes, Monica I. Abrudan, Joel C. Armstrong, Ruth Bennett, William Chow, Joanna Collins, Stephan C. Collins, Anne Czechanski, Petr Danecek, Mark Diekhans, Dirk D. Dolle, Matt Dunn, Richard Michael Durbin, , Thomas Keane

The paper presents full-length de novo genome assemblies for 16 inbred mouse strains, identifying strain-specific haplotypes and novel functional loci, including a large unannotated gene with potential developmental roles.

bioRxiv · Feb 12, 2018 · PreprintGenomics

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Valerie A Schneider, Tina Graves Lindsay, Kerstin Howe, Nathan Bouk, Hsiu-Chuan Chen, Paul A. Kitts, Terence D Murphy, Kim D. Pruitt, Françoise Thibaud-Nissen, Derek Albracht, Robert S Fulton, Milinn Kremitzki, Vince Magrini, Chris Markovic, Sean McGrath, , Deanna M Church

This paper evaluates GRCh38 and de novo haploid assemblies, finding that GRCh38 remains superior for complex genomic regions and coding sequences despite improvements in newer assemblies.

Genome Research · Apr 10, 2017Peer-reviewedGenomics

The pig X and Y chromosomes: structure, sequence and evolution

Benjamin M Skinner, Carole A Sargent, Carol Churcher, Toby Hunt, Javier Herrero, Jane Loveland, Matt Dunn, Sandra Louzada, Beiyuan Fu, William Chow, James Gilbert, Siobhan Austin-Guest, Kathryn Beal, Denise Carvalho-Silva, William Cheng, , Chris Tyler-Smith

This paper presents improved assemblies and gene annotations for the pig X and Y chromosomes, revealing evolutionary mechanisms and gene content differences compared to other mammals.

Genome Research · Nov 11, 2015Peer-reviewedGenomics