Author

Prabha Ajjikuttira

The University of QueenslandORCID 0000-0002-4546-4728Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam D. EwingiD· 2 shared Francisco Jose Sanchez-LuqueiD· 2 shared Gabriela Oana BodeaiD· 2 shared Geoffrey J. FaulkneriD· 2 shared Jay RasmusseniD· 2 shared Patricia GerdesiD· 2 shared Alberto Anastacio AmarillaiD· 1 shared Alexander A. KhromykhiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Adam D. EwingORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

LINE-1 retrotransposon activation intrinsic to interneuron development

Gabriela Oana Bodea, Juan Manuel Botto, Maria E. Ferreiro, Francisco Jose Sanchez-Luque, Jose de los Rios Barreda, Jay Rasmussen, Muhammed A. Rahman, Laura R. Fenlon, Natasha Jansz, Carolina Gubert, Patricia Gerdes, Liviu‐Gabriel Bodea, Prabha Ajjikuttira, Darwin J. Da Costa Guevara, Linda Cumner, , Geoffrey J. Faulkner

The paper shows that SOX6 activates LINE-1 retrotransposons in PV+ interneurons, leading to increased morphological complexity through a novel CAPS2 isoform.

bioRxiv · Mar 20, 2022 · PreprintGenomics

No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing

Nathan Smits, Jay Rasmussen, Gabriela Oana Bodea, Alberto Anastacio Amarilla, Patricia Gerdes, Francisco Jose Sanchez-Luque, Prabha Ajjikuttira, Naphak Modhiran, Benjamin Liang, Jamila Faivre, Ira W. Deveson, Alexander A. Khromykh, Daniel Watterson, Adam D. Ewing, Geoffrey J. Faulkner

The paper uses long-read sequencing to investigate SARS-CoV-2 integration into the human genome and finds no evidence of such integration in infected cells.

Cell Reports · Jul 28, 2021Peer-reviewedGenomics