Author

Julius Judd

Cornell UniversityORCID 0000-0002-4602-0205Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:gene regulatory network inference· 4 Assay:ChIP-seq· 3 Approach:experimental assay· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:human· 2 Organism:mouse· 2 Approach:statistical model· 2

Frequent Co-Authors

Cédric FeschotteiD· 2 shared John T. LisiD· 2 shared Alan Zhong· 1 shared Alexis DziubekiD· 1 shared Charles G. DankoiD· 1 shared Dig Bijay MahatiD· 1 shared Edward J. Rice· 1 shared Ellen J. PrithamiD· 1 shared

Activity by Year

2020-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Cédric FeschotteORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Evolution of mouse circadian enhancers from transposable elements

Julius Judd, Hayley Sanderson, Cédric Feschotte

The paper investigates how transposable elements, specifically RSINE1, contribute to the evolution of circadian enhancers in mouse liver by analyzing their binding sites and sequence maturation.

Genome biology · Jun 29, 2021Peer-reviewedGenomics

Recurrent evolution of vertebrate transcription factors by transposase capture.

Rachel L. Cosby, Julius Judd, Ruiling Zhang, Alan Zhong, Nathaniel Garry, Ellen J. Pritham, Cédric Feschotte

The paper shows DNA transposons have repeatedly contributed exons and splice sites to form new vertebrate genes, particularly transcription factors, through exon shuffling and alternative splicing over 350 million years.

Science · Feb 19, 2021Peer-reviewedGenomics

Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription

Julius Judd, Fabiana M. Duarte, John T. Lis

This study shows GAF, a Drosophila pioneer factor, works with chromatin remodelers PBAP and NURF to activate transcription by opening chromatin and facilitating Pol II recruitment and elongation.

Genes & Development · Jan 1, 2021Peer-reviewedGenomics

A rapid, sensitive, scalable method for Precision Run-On sequencing (PRO-seq)

Julius Judd, Luke Wojenski, Lauren M. Wainman, Nathaniel D. Tippens, Edward J. Rice, Alexis Dziubek, Geno J. Villafano, Erin M. Wissink, Philip P. Versluis, Lina Bagepalli, Sagar R. Shah, Dig Bijay Mahat, Jacob M. Tome, Charles G. Danko, John T. Lis, Leighton J. Core

A precision run-on sequencing (PRO-seq) variant with one streptavidin bead binding and on-bead enzymatic steps yields adapter-ligated cDNA in about 10 h and libraries from 0.05–0.25 × 10^6 cells.

bioRxiv · May 18, 2020 · PreprintGenomics✦ In-depth digest