Michael J. Plank

Systems level analysis of time and stimuli specific signaling through PKA

The paper analyzes PKA signaling in yeast using phosphoproteomics to show how different cAMP concentrations and conditions affect phosphorylation thresholds and growth states.

Network inference from temporal phosphoproteomics informed by protein-protein interactions

This study introduces a graph-based method to infer temporal signaling networks from high-resolution phosphoproteomics data, improving the identification of signaling-relevant interactions.

pSiteExplorer: Visualization of the mass spectrometric data underlying phospho-site quantification

pSiteExplorer visualizes phospho-site quantification data from mass spectrometry, contrasting individual and summed phospho-peptide intensities with site-level values.

The Aspartic Protease Ddi1 Contributes to DNA-Protein Crosslink Repair in Yeast

This study identifies Ddi1 as a protease involved in DNA-protein crosslink repair in yeast, showing its role in evicting crosslinked proteins from DNA.