Author

Andrew M. Blakely

National Institutes of HealthORCID 0000-0002-5013-3851Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Amber Leila SarvestaniiD· 2 shared Jason HoiD· 2 shared Jeremy L. DavisiD· 2 shared Jonathan Matthew HernandeziD· 2 shared Kenneth LubericeiD· 2 shared Kirsten RemmertiD· 2 shared Michael B. YaffeiD· 2 shared Sophia Xiao· 2 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCancer Biology

Amber Leila SarvestaniORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintAug 9, 2026

Tumor-specific Kinase Motif Enrichment Analysis Identifies Personalized Therapeutic Cancer Targets

Tracey Pu, Brian A. Joughin, Priyanka Prakash Desai…·Jonathan Matthew Hernandez

The paper uses phosphoproteomic data and KMEA to identify tumor-specific kinase activity in GEP-NETs, revealing potential therapeutic targets.

DOI 10.64898/2026.07.31.742097

humanproteomics

𝕏 PostBluesky

Cancer BiologybioRxivPreprintOct 26, 2025

A simple circuit to sustain intact tumor microenvironments for complex drug interrogations

Amber Leila Sarvestani, Samantha M. Ruff, Kirsten Remmert…·Jonathan Matthew Hernandez

The paper develops a perfusion circuit system to preserve tumor microenvironments in 3D patient-derived tumor models for up to 48 hours, enabling complex drug interrogations.

DOI 10.1101/2025.10.26.684624

humanbulk RNA-seq

𝕏 PostBluesky