Author

Jonathan C. Schmok

Arc Research InstituteORCID 0000-0002-5173-902XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:protein structure prediction· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:multiple species· 1

Frequent Co-Authors

Aaron F. CarliniD· 1 shared Aditi T. MerchantiD· 1 shared Alex E. ClarkiD· 1 shared Ali Taghibakshi· 1 shared Amy X. LuiD· 1 shared Anthony Beardsworth CostaiD· 1 shared Anton Vorontsov· 1 shared Assael A. MadrigaliD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMolecular Biology

Aaron F. CarlinORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites

Joy S. Xiang, Karen X. Zhao, Laliv Tadri, Kurt Tamaru, Brian A. Yee, Katherine L. Rothamel, Jonathan C. Schmok, Jasmine R. Mueller, Samuel S. Park, Assael A. Madrigal, Rachael N. McVicar, Elizabeth M. Kwong, Ben A. Croker, Alex E. Clark, Aaron F. Carlin, , Gene Wei-Ming Yeo

This study maps SARS-CoV-2 protein-RNA interactions using eCLIP, revealing new regulatory sites for viral replication and translation.

Nature Communications · Oct 30, 2026Peer-reviewedMolecular Biology

Genome modeling and design across all domains of life with Evo 2

Garyk Brixi, Matthew G. Durrant, Jerome Ku, Michael Poli, Greg Brockman, Daniel Chang, Gabriel A. Gonzalez, S. B. King, David B. Li, Aditi T. Merchant, Mohsen Naghipourfar, Eric Nguyen, Chiara Ricci-Tam, David W. Romero, Gwanggyu Sun, , Brian Hie

A 40B-parameter DNA model trained on 9.3 trillion tokens scores coding and noncoding variants zero-shot, exposes interpretable sequence features, and writes chromosome-scale sequences.

bioRxiv · Feb 18, 2025 · PreprintGenomics✦ In-depth digest