Author

Andrew D. Johnson

University of NottinghamORCID 0000-0002-5183-2072Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Matthew LooseiD· 2 shared Teri ForeyiD· 2 shared Alexander PayneiD· 1 shared Benjamin Scott S SimpsoniD· 1 shared Catherine Redwood· 1 shared Darren Crowley· 1 shared Fei SangiD· 1 shared Helena Acosta· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersDevelopmental Biology

Matthew LooseORCID

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2 papers

Recent·Most cited

The Nanog epigenetic remodeling complex was essential to vertebrate mesoderm evolution

Luke A. Simpson, Darren Crowley, Teri Forey, Helena Acosta, Zoltán Ferjentsik, Jodie Chatfield, Alexander Payne, Benjamin Scott S Simpson, Catherine Redwood, James E. Dixon, Nadine Holmes, Fei Sang, Ramiro Alberio, Matthew Loose, Andrew D. Johnson

The paper shows that NANOG and NODAL interact with DPY30 to regulate H3K4me3 deposition in axolotl primitive ectoderm, conserved in humans, establishing a basal state of vertebrate pluripotency.

bioRxiv · Sep 8, 2022 · PreprintDevelopmental Biology

Virtual Genome Walking: Generating gene models for the salamander Ambystoma mexicanum

Teri Evans, Andrew D. Johnson, Matthew Loose

The paper introduces a method to generate gene models for the axolotl using low-coverage genomic reads, producing over 19,000 gene models.

Scientific Reports · Jan 8, 2018Peer-reviewedBioinformatics