Author

James Mullahoo

Broad InstituteORCID 0000-0002-5469-4066Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:proteomics· 1

Frequent Co-Authors

Ajay PillaiiD· 1 shared Albert Lee· 1 shared Alexandra B. London· 1 shared Aravind SubramanianiD· 1 shared Avi Ma’ayaniD· 1 shared Brook T. Wassie· 1 shared Caitlin E. MillsiD· 1 shared Cemal ErdemiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

Ajay PillaiORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 26, 2025

Diversity and single-cell activity of endolithic microbes in sediment-hosted carbonate nodules within and below the sulfate-methane transition zone

Sergio A. Parra, Magdalena J. Mayr, James Mullahoo…·Victoria J. Orphan

This study examines microbial communities in carbonate nodules and surrounding sediments within and below the sulfate-methane transition zone, revealing active endolithic microbes and their physiological responses to geochemical conditions.

2 citations

metagenomicsexperimental assay

𝕏 PostBluesky

Systems BiologyCommunications BiologyPeer-reviewedOct 7, 2022

A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses

Sean M. Gross, Mark A. Dane, Rebecca Lee Smith…·Laura M. Heiser

The paper presents a LINCS Microenvironment perturbation dataset cataloging transcriptional, proteomic, epigenomic, and phenotypic responses of MCF10A cells to six ligands, enabling integrative analysis of molecular and phenotypic changes.

35 citations

humanbulk RNA-seq

𝕏 PostBluesky