Author

Yves Allory

Centre National de la Recherche ScientifiqueORCID 0000-0002-5526-077XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Alexandre DE LA TAILLE· 1 shared Alice BlondeliD· 1 shared Álvaro LladseriD· 1 shared Andrés Hernández‐OliverasiD· 1 shared Antonin MorilloniD· 1 shared Arturo Londoño‐VallejoiD· 1 shared Audrey Rapinat· 1 shared Aurélien de ReynièsiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Alexandre DE LA TAILLE

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

The differentiation and functional landscape of tumor-resident CD8⁺ T cells shapes immunity and clinical outcomes in clear cell renal cell carcinoma

Sofía Hidalgo, Andrés Hernández‐Oliveras, Jimena Tosello Boari, Javiera Reyes-Alvarez, Sergio Herńandez-Galaz, Catalina Bustamante, Ernesto López, Yoann Missolo-Koussou, Wilfrid Richer, Vincenzo Benedetti, Farides Saavedra, Marco Fraga, Eduardo Roa, Diego A. Figueroa, Christine Sedlik, , Álvaro Lladser

The paper identifies three CD8+ T cell subsets in ccRCC and links their differentiation states to clinical outcomes.

bioRxiv · Mar 15, 2026 · PreprintImmunology

Deep Learning Bridges Histology and Transcriptomics to Predict Molecular Subtypes and Outcomes in Muscle-Invasive Bladder Cancer

Alice Blondel, Clémentine Krucker, Valentin Harter, Melissa Da Silva, Clarice S. Groeneveld, Aurélien de Reyniès, Maryam Karimi, Simone Benhamou, Isabelle Bernard‐Pierrot, Christian Pfister, Stéphane Culine, Yves Allory, Thomas Walter, Jacqueline Fontugne

This paper develops a deep learning model to predict molecular subtypes and outcomes in muscle-invasive bladder cancer using histopathological images instead of RNA sequencing.

bioRxiv · Oct 23, 2025 · PreprintCancer Biology

Blind exploration of the unreferenced transcriptome reveals novel RNAs for prostate cancer diagnosis

Marina Pinskaya, Zohra Saci, Mélina Gallopin, Marc Gabriel, Ha T.N. Nguyen, Virginie Firlej, Marc Descrimes, Audrey Rapinat, David Gentien, Alexandre DE LA TAILLE, Arturo Londoño‐Vallejo, Yves Allory, Daniel Gautheret, Antonin Morillon

The paper introduces a reference-free computational method to identify novel RNAs for prostate cancer diagnosis, finding that 9 unannotated lncRNAs outperform existing biomarkers.

Life Science Alliance · Nov 15, 2019Peer-reviewedGenomics