Author

Payal Jain

Children's Hospital of PhiladelphiaORCID 0000-0002-5914-9083Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Adam Cain ResnickiD· 2 shared Bo ZhangiD· 2 shared Jaclyn TaroniiD· 2 shared Jo Lynne RokitaiD· 2 shared Komal S. RathiiD· 2 shared Krutika Satish GaonkariD· 2 shared Miguel BrowniD· 2 shared Phillip B. StormiD· 2 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Adam Cain ResnickORCID

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Author profile →

2 papers

Recent·Most cited

OpenPBTA: An Open Pediatric Brain Tumor Atlas

Joshua A. Shapiro, Krutika Satish Gaonkar, Stephanie J. Spielman, Candace Savonen, Chanté J. Bethell, Run Jin, Komal S. Rathi, Yuankun Zhu, Laura E. Egolf, Bailey Farrow, Daniel P. Miller, Yang Yang, Tejaswi Koganti, Nighat Noureen, Mateusz Koptyra, , Jaclyn Taroni

OpenPBTA provides a collaborative platform to genomically characterize 1,074 pediatric brain tumors and 22 cell lines, offering analysis modules and somatic datasets for research and clinical applications.

Cell Genomics · May 31, 2023Peer-reviewedGenomics

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Krutika Satish Gaonkar, Fédérico Marini, Komal S. Rathi, Payal Jain, Yuankun Zhu, Nicholas A. Chimicles, Miguel Brown, Ammar S. Naqvi, Bo Zhang, Phillip B. Storm, John M. Maris, Pichai Raman, Adam Cain Resnick, Konstantin Strauch, Jaclyn Taroni, Jo Lynne Rokita

annoFuse filters and prioritizes oncogenic gene fusions from RNA-Seq data, improving identification of clinically relevant fusions in cancer datasets.

BMC Bioinformatics · Dec 1, 2020Peer-reviewedBioinformatics