Author

Dmitry S. Molodenskiy

Deutsches Elektronen-Synchrotron DESYORCID 0000-0002-5954-4294Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Molecular Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Assay:protein structure· 3 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:human· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Dmitri I. SverguniD· 3 shared Gerardo TaurielloiD· 2 shared Stefan BienertiD· 2 shared Torsten F. SchwedeiD· 2 shared Agata LaydoniD· 1 shared Alla S. KostyukovaiD· 1 shared András HatosiD· 1 shared Andrew Mark WaterhouseiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Dmitri I. SvergunORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMar 1, 2025

AlphaPulldown2 - A General Pipeline for High-Throughput Structural Modeling

Dmitry S. Molodenskiy, Valentin J. Maurer, Dingquan Yu…·Jan Kosiński

AlphaPulldown2 provides a pipeline for high-throughput protein structural modeling with automated workflows and improved data management.

15 citationstop 4%

protein structureexperimental assay

BioinformaticsGigaSciencePeer-reviewedJan 1, 2022

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Mihály Váradi, Sreenath Sasidharan Nair, Ian Sillitoe…·Sameer S Velankar

3D-Beacons provides a federated network to unify access to protein structure data from multiple sources, enabling comparative analysis of models.

32 citations

protein structureexperimental assay

NeuroscienceeLifePeer-reviewedMay 4, 2021

Autism associated SHANK3 missense point mutations impact conformational fluctuations and protein turnover at synapses

Michael Bucher, Stephan Niebling, Yuhao Han…·Marina Mikhaylova

This study shows two ASD-associated SHANK3 mutations cause structural changes and altered protein turnover at synapses.

33 citations

humanprotein structure

Molecular BiologyScientific ReportsPeer-reviewedMay 15, 2020

An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions

Dmitry S. Molodenskiy, Haydyn D. T. Mertens, Dmitri I. Svergun

The paper introduces an automated pipeline for SAXS data analysis of transmembrane proteins in detergent solutions, improving model resolution with a priori information.

16 citations

experimental assaysoftware / tool