Dilmurat Yusuf

The paper compares DNase-seq and ATAC-seq for open chromatin and TF footprinting, showing protocol-specific biases affect performance and reproducibility.

The paper analyzes RBP-RNA interactions across 64 RBPs to identify regulatory modules and their functional roles in RNA metabolism and localization.

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

The paper presents a community-driven framework for interactive data analytics training in life sciences, enabling researchers to learn through web-based computation without software installation.

The paper identifies and removes small RNA contaminants from microRNA extraction kits, showing their presence in human plasma samples and published datasets.

This paper reviews techniques and software for analyzing bisulfite sequencing data, focusing on quality checks, differential methylation, segmentation, and annotation methods.