Jason Ken Adhinarta

VesiclePy automates vesicle segmentation, classification, and spatial analysis in large-volume electron microscopy data, processing multiterabyte datasets and classifying vesicles into five types.

This paper introduces CytoTape, a tool for continuous, multiplexed recording of gene regulation dynamics over weeks at single-cell resolution, and demonstrates its use in measuring transcription factor activities.

WormID-Bench evaluates methods for neuron detection, identification, and tracking in C. elegans using a multi-laboratory dataset, highlighting the need for improved computational approaches.

The paper introduces a vCLEM method using fluorescent scFvs to combine molecular labeling with ssEM, revealing new cell types and subcellular features in mouse cerebellar cortex.